Relion

RELION can be loaded using the following command:

$ module load RELION/4.0.1-foss-2021a

An example script to run RELION can be seen here using

#!/usr/bin/env bash
#SBATCH --job-name=RELION_CPU_example          # Job name
#SBATCH --mail-type=BEGIN,END,FAIL             # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=abc123@york.ac.uk          # Where to send mail
#SBATCH --account=dept-proj-year               # Project account to use
#SBATCH --ntasks=1                             # Number of tasks to run
#SBATCH --mem=4gb                              # Memory requested
#SBATCH --time=00:30:00                        # Time requested

# Abort if any command fails
set -e

module purge                    # Purges all loaded modules

module load RELION/4.0.1-foss-2021a

echo
echo Job started at `date`
echo Job ID $SLURM_JOB_ID

mpiexec -n XXXmpinodesXXX XXXcommandXXX

echo
echo Job completed at `date`
echo Job ID $SLURM_JOB_ID

Note

RELION can use GPUs, and is available on Viking’s virtual desktop