VOX-FE

VOX-FE can be loaded using the following command:

$ module load module load VOX-FE/1.0-foss-2019b-Python-3.7.4

An example job script can be found here. This script described using a whole node with 96 cores exclusively for two hours. Remember to update the account code and email address provided to slurm to your own details and be sure to substitute Script.txt with the path to your script.

#!/usr/bin/env bash
#SBATCH --job-name=VOX-FE_CPU_example       # Job name
#SBATCH --mail-type=BEGIN,END,FAIL          # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=abc123@york.ac.uk       # Where to send mail to
#SBATCH --nodes=1                           # Number of nodes
#SBATCH --exclusive                         # Exclusively use the whole node
#SBATCH --time=02:00:00                     # Time of the job in HH:MM:SS
#SBATCH --output=VOX-FE_CPU_example-%j.log  # Output file
#SBATCH --account=dept-proj-year            # Project account to use

# Abort if any command fails
set -e

module purge                                # purge any loaded modules
module load OpenMPI/3.1.4-GCC-8.3.0
module load VOX-FE/1.0-foss-2019b-Python-3.7.4

echo "Running small-vox-fe on $SLURM_JOB_CPUS_PER_NODE CPU cores"
echo "Nodes allocated to job: " $SLURM_JOB_NUM_NODES "(" $SLURM_JOB_NODELIST ")"
echo

date
mpirun -np $SLURM_JOB_CPUS_PER_NODE PARA_BMU Script.txt
date

Note

VOX-FE can not take advantage of a GPU, and runs purely on a CPU